Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs34378114 chr7:98940722 TAGAG/T 1.29E-6 504 21.13 26.13 9.7 KM Plot
LUAD rs34649365 chr7:123111686 T/TCC 1.11E-5 495 21.87 22.47 12.53 KM Plot
LUAD rs34691578 chr7:123102829 G/A 1.05E-5 494 21.87 22.77 9.63 KM Plot
LUAD rs34744524 chr7:123192233 T/TA 4.75E-6 488 21.87 22.3 13.08 KM Plot
LUAD rs34765630 chr10:132088692 A/G 0 502 21.9 22.13 2.95 KM Plot
LUAD rs35244236 chr7:123152764 G/A 4.89E-6 500 21.82 22.62 13.08 KM Plot
LUAD rs35275680 chr7:123177315 T/A 8.22E-6 494 21.9 22.4 13.08 KM Plot
LUAD rs35656351 chr7:98947258 G/A 1.28E-10 504 21.07 26.13 9.32 KM Plot
LUAD rs35665867 chr1:109395436 G/A 0 503 21.93 21.72 2.57 KM Plot
LUAD rs36102386 chr17:47439987 TGG/T 5.12E-11 504 21.93 19.15 4.55 KM Plot
LUAD rs36122765 chr16:71504183 G/C 2.13E-5 495 21.93 20.72 13.42 KM Plot
LUAD rs369322961 chr17:47398246 G/T 3.68E-11 499 21.88 21.93 4.55 KM Plot
LUAD rs369800789 chr7:98953435 CTTAAA/C 2.2E-10 502 21 25.9 9.32 KM Plot
LUAD rs3793218 chr7:158852659 T/C 6.1E-7 483 22.87 20.23 4.03 KM Plot
LUAD rs3794045 chr11:62602345 G/C 2.27E-5 505 21.93 21.73 7.7 KM Plot